Bioinformatics
MolBiol.net | Bioinformatics Tools
Bioinformatics.Org
Eran Segal home page
DUMMIES.com | Bioinformatics
CCGB Tools
Bioinformatics.Org: Welcome to the Bioinformatics Organization!
Databases / Links
NCBI HomePage
PubMed
TAIR
NASC
MIPS
TIGR
KEGG Encyclopedia
SIGnAL
T-DNAexpress : The SIGnAL Arabidopsis Gene Mapping Tool
GARNET
TAIR Arabidopsis Gene Hunter
TAIR Gene Name Search
AT gene catalog KEGG
Entrez AT Genome view
UK CropNet - The UK Crop Plant Bioinformatics
GENA - GENOMICS ARRAY DATABASE
ArabiNet
Arabidopsis Links
Phylofoot.org
Sacch3D: URLs
Clustering / Array Data Mining + Visualisation
EPCLUST
CCGB: TableView
GeneXPress
Ketil's Bioinformatics Page
A tool-kit for cDNA microarray and promoter analysis
Gene Expression Levels
AT MPSS Site
Alignment / Sequence Comparison
TAIR WU-BLAST 2.0 Form
TAIR BLAST
NCBI BLAST
Fasta3
SAM Sequence Alignment and Modeling Software
PFAAT - Protein Family Alignment Annotation Tool
ACGT
Clustal Analysis / Trees
CLUSTALW
GeneBee ClustalW 1.75
TreeTop - Phylogenetic Tree prediction
Promoter Prediction
NNPP: Neural Network Promoter Prediction
Promoter 2.0 Prediction Server
Web Promoter Scan Service
Core Promoter - human
CONPRO: the CONsensus PROmoter predictor
Dragon Promoter Finder Version 1.3
FunSiteP 2.1 Promoter Recognition
Genomatix: GenomatixSuite Registration
PromoterInspector+MatInspector - mammalian
McPromoter promoter prediction server
Motif Search / Prediction
PLACE Web Signal Scan
AlignACE / ScanACE
HMMER
TESS : Transcription Element Search System
PatSearch 1.1
Web Signal Scan Service
AliBaba2
TFBind input
MatInspector
MSCAN - TF binding sites detection
RSA tools
SMILE
R'MES
Consensus
MEME
The Gibbs Motif Sampler Homepage
Motif Sampler v2.0
Improbizer
YEBIS (Motif Extraction Module) Home Page
BioProspector
FootPrinter 2.0 Web Server
Co-Bind Program Download
MOTIF: Searching Protein and Nucleic Acid Seqs
cis DNA Elements Databases
TRANSFAC - The Transcription Factor Database
TRRD - Transcription regulatory region database
PlantCARE
PLACE Home
Regulon Data Base
SCPD - Yeast Promoter Database
EPD - Eukaryotic Promoter Database
Transcription Factor Analysis
RSA tools - transcription
Julian Schroeder's Laboratory
Jen Sheen's Lab - TF
AGRIS
Protein Analysis
Genesilico Metaserver - meta
STRUctural CLAssification
META II - PredictProtein server
InterPro Home
ExPASy - Tools
ExPASy Molecular Biology Server
SignalP server
ARAMEMNON --- Arabidopsis membrane protein database
SMART - Simple Modular Architecture Research Tool
3motif - motifs in three dimensions
MASS : Multiple Alignment by Secondary Structures
LOC3d: Database of predicted subcellular localization for eukaryotic PDB chains.
EMBOSS Homepage
Protein Structure Prediction
HMM-based Protein Structure Prediction, SAM-T02 ISREC COILS Server
Protinfo - protein modelling server
3matrix - motifs in three dimensions
PCR / Primers / Restriction / Cloning / Vectors
Primer3 Input (primer3_www.cgi v 0.2)
Oligo Analyzer 2.5
GENERI BIOTECH - Oligonukleotidy
Webcutter 2.0
Restriction Enzyme Site Mapper ver. 2
pGreen on the Web
GATEWAY VECTORS
Transposon/T-DNA
Torrey Mesa Research Institute
University of Wisconsin - Biotechnology Center
NASC Insert sequence blast server
SINS Database
THE PLANT CELL ONLINE -- Data Supplement -
Ds Element Genetic Map
FlyBase Transposons/Vectors query form
T-DNA enhancer traps in Arabidopsis
CAPS Markers
RNA
Gutell Lab Comparative RNA Web Site
Metabolic pathways / Enzymes
KEGG Metabolic Pathways
ExPASy - Biochemical Pathways
Metabolic Database
Pathway Databases
Searchable enzyme EC list
subnetwork hierarchies of biochemical pathways
Search Enzyme nomenclature
Protein Analysis
Genesilico Metaserver - meta
STRUctural CLAssification
META II - PredictProtein server
InterPro Home
ExPASy - Tools
ExPASy Molecular Biology Server
SignalP server
ARAMEMNON --- Arabidopsis membrane protein database
SMART - Simple Modular Architecture Research Tool
3motif - motifs in three dimensions
MASS : Multiple Alignment by Secondary Structures
LOC3d: Database of predicted subcellular localization for eukaryotic PDB chains.
EMBOSS Homepage